SNP Profiles of LCT EEN 163 /D View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	AT	CT	CG	GG	GG	TT	GG	GT	AC	GT	CT	TT	AA	CC
1._RUQ_180	AA	TT	CC	AA	GG	TT	GG	GG	AA	GG	CC	TT	GG	CC
2._RUQ_180	__	__	CC	__	__	__	__	GG	__	__	__	__	__	__
3._RUQ_180	__	__	GG	__	__	__	__	__	__	__	__	__	GG	__
4._LCT_EEN_163_/D	__	__	CC	__	__	__	__	GG	__	__	__	__	GG	__

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AT	TT	CT	AA	CG	GG	GG	TT	AA	CC	CT	CT	AG	GT
1._RUQ_180	AA	TT	CC	AA	GG	GG	CC	CC	TT	CC	TT	CC	AA	TT
2._RUQ_180	__	__	CC	AA	__	__	CC	__	__	CC	__	__	AA	TT
3._RUQ_180	__	__	__	AA	__	GG	GG	GG	__	CC	__	__	AA	AA
4._LCT_EEN_163_/D	__	__	__	AA	__	__	CC	CC	__	__	__	__	__	TT

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	CT	CG	AG	CC	AG	TT	CT	CC	AT	CG	AG	CC	CT	AC
1._RUQ_180	CC	CC	AA	CC	AG	TT	CC	CC	AA	GG	AA	AA	CC	AC
2._RUQ_180	CC	__	__	__	__	__	CC	CC	__	GG	__	AA	__	__
3._RUQ_180	__	__	__	__	__	__	GG	CC	__	GG	__	AA	__	__
4._LCT_EEN_163_/D	__	__	AA	__	__	__	__	CC	__	GG	__	AA	__	__

	43	44	45	46	47	48	49	50	51	52	53	54	55	56
_Input profile	CC	AC	AG	AC	TT	AG	GG	AG	CT	AC	AT	GT	TT	AC
1._RUQ_180	CC	AC	AA	AA	TT	AG	GG	AA	TT	AC	AA	GT	GG	CC
2._RUQ_180	__	__	AA	__	__	AG	__	__	__	AC	__	__	__	__
3._RUQ_180	__	__	AA	__	__	AG	__	__	__	AC	__	__	__	__
4._LCT_EEN_163_/D	__	__	__	__	__	AG	__	__	__	AC	__	__	__	__

	57	58	59
_Input profile	CT	AC	TT	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
1._RUQ_180	TT	AA	CT	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
2._RUQ_180	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
3._RUQ_180	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
4._LCT_EEN_163_/D	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X

Input profile: SC_20_[COL] RUQ_690

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

Population Assignment:

View Data

Ame
0.513 Cri
0.480

1._LCT_EEN_163_/D RUQ_180

61.9 %
59 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

Population Assignment:

View Data

LCT
0.996

2._LCT_EEN_163_/D RUQ_180

59.4 %
16 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

3._LCT_EEN_163_/D RUQ_180

56.3 %
16 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

Mars, 2018

4._LCT_EEN_163_/D

50 %
13 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 4A A 104 T1

Dapeng Zhang, 2014

Key to SNP Markers

1	TcSNP1527	2	TcSNP1524	3	TcSNP1458	4	TcSNP1404	5	TcSNP1401
6	TcSNP1293	7	TcSNP1275	8	TcSNP1253	9	TcSNP1230	10	TcSNP1205
11	TcSNP1144	12	TcSNP1112	13	TcSNP1062	14	TcSNP1053	15	TcSNP1019
16	TcSNP1010	17	TcSNP999	18	TcSNP998	19	TcSNP945	20	TcSNP899
21	TcSNP872	22	TcSNP836	23	TcSNP835	24	TcSNP823	25	TcSNP800
26	TcSNP739	27	TcSNP731	28	TcSNP723	29	TcSNP702	30	TcSNP660
31	TcSNP645	32	TcSNP644	33	TcSNP642	34	TcSNP640	35	TcSNP602
36	TcSNP591	37	TcSNP589	38	TcSNP577	39	TcSNP546	40	TcSNP529
41	TcSNP522	42	TcSNP519	43	TcSNP421	44	TcSNP363	45	TcSNP329
46	TcSNP305	47	TcSNP290	48	TcSNP230	49	TcSNP194	50	TcSNP189
51	TcSNP176	52	TcSNP144	53	TcSNP143	54	TcSNP131	55	TcSNP52
56	TcSNP49	57	TcSNP33	58	TcSNP19	59	TcSNP13

SNP Profiles of LCT EEN 163 /D View Data

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Input profile: SC_20_[COL] RUQ_690

1._LCT_EEN_163_/D RUQ_180

61.9 % 59 shared markers

2._LCT_EEN_163_/D RUQ_180

59.4 % 16 shared markers

3._LCT_EEN_163_/D RUQ_180

56.3 % 16 shared markers

4._LCT_EEN_163_/D

50 % 13 shared markers

61.9 %
59 shared markers

59.4 %
16 shared markers

56.3 %
16 shared markers

50 %
13 shared markers